NBDC Research ID: hum0039.v1

 

SUMMARY

Aims: To clarify the mechanism of TKI resistant in gastrointstinal stromal tumors

Methods: Exome DNA sequence analysis for imatinib resistant gastrointestinal stromal tumor (GIST)

Participants/Materials: GIST diagnosed pathologically as a imatinib resistant lesion

 

Data Set IDType of DataCriteriaRelease Date
JGAS00000000039
NGS (Exome) Controlled Access (Type I) 2016/12/27

*Release Note 

* Data users need to apply the Form 2 (Application Form for Using NBDC Human Data) to reach the Controlled Access Data. Learn more

 

MOLECULAR DATA

JGAS00000000039

Participants/Materials Imatinib resistant GIST : 4 cases
Targets NGS (Exome)
Target Loci for Capture Methods -
Platform Illumina [HiSeq 1500]
Library Source gDNA from Surgical tumor specimen
Cell Lines -
Library Construction (kit name) SureSelect Human All Exon V5+UTRs
Fragmentation Methods Ultrasonic fragmentation (Covaris)
Spot Type Paired-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers) 101 bp
Japanese Genotype-phenotype Archive Data set ID JGAD00000000039
Total Data Volume 202 GB (fastq)
Comments (Policies) NBDC policy & hum0039 policy

 

DATA PROVIDER

Principal Investigator: Tsuyoshi Takahashi

Affiliation: Department of Surgery, Osaka university graduate school of medicine

Project / Group Name: -

Funds / Grants (Research Project Number):

NameTitleProject Number
- - -

 

PUBLICATIONS

TitleDOIData Set ID
1 - - -
2

 

USERS (Controlled-Access Data)

Principal Investigator: Affiliation: Data in Use (Data Set ID)Period of Data Use