NBDC Research ID: hum0126.v1

 

SUMMARY

Aims: To identify the novel disease susceptibility genes for Childhood Idiopathic Nephrotic Syndrome

Methods: GWAS

Participants/Materials: Healthy controls and Childhood Idiopathic Nephrotic Syndrome patients

 

Data Set IDType of DataCriteriaRelease Date
hum0126.v1.gwas.v1 GWAS for 224 Childhood Idiopathic Nephrotic Syndrome patients and 419 healthy adult controls Un-restricted Access 2018/04/27

*Release Note

 

MOLECULAR DATA

hum0126.v1.gwas.v1

Participants/Materials 224 Childhood Idiopathic Nephrotic Syndrome patients (ICD10: N049) and 419 healthy adult controls
Targets genome wide SNPs
Target Loci for Capture Methods -
Platform Affymetrix [Japonica Array v1]
Library Source DNAs extracted from peripheral blood cells
Cell Lines -
Reagents (Kit, Version) Axiom 2.0 Reagent kit
Genotype Call Methods (software) Axiom Analysis suite 1.0.0.3
Filtering Methods Sample Call rate < 0.97, SNP call rate < 0.97, HWE P < 0.0001, MAF < 0.05
Marker Number (after QC) 495,887 SNPs (hg19)
NBDC Data Set ID

hum0126.v1.gwas.v1

(Click the Data Set ID to download the file)

Dictionary file

Total Data Volume 11.6 MB
Comments (Policies) NBDC policy

*When the research results including the data which were downloaded from NHA/DRA, are published or presented somewhere, the data user must refer the papers which are related to the data, or include in the acknowledgment. Learn more

 

DATA PROVIDER

Principal Investigator: Kazumoto Iijima

Affiliation: Department of Pediatrics, Kobe University Graduate School of Medicine

Project / Group Name: The Research Consortium on Genetics of Childhood Idiopathic Nephrotic Syndrome in Japan

Funds / Grants (Research Project Number):

NameTitleProject Number
Platform Program for Promotion of Genome Medicine, Japan Agency for Medical Research and Development (AMED) Identification of disease susceptible genes and drug sensitive genes in childhood nephrotic syndrome JP17km0405108h0005

 

PUBLICATIONS

TitleDOIData Set ID
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