NBDC Research ID: hum0114.v1

 

SUMMARY

Aims: Analysis of statistical genetics using cell line genotype data of Japanese ancestry

Methods: Genome-wide association study for psoriasis

Participants/Materials: Cell line genotype data of Japanese ancestry

 

Data Set IDType of DataCriteriaRelease Date
hum0114.v1.gwas.v1 GWAS for psoriasis Un-restricted Access 2017/12/18

*Release Note

 

MOLECULAR DATA

hum0114.v1.gwas.v1

Participants/Materials

282 psoriasis patients (ICD10: L400)

426 healthy controls

Targets genome wide SNPs
Target Loci for Capture Methods -
Platform Illumina [HumanCoreExome BeadChip]
Library Source DNA extracted from B cell lines of Japanese ancestry
Cell Lines -
Reagents (Kit, Version) Illumina HumanCoreExome BeadChip kit
Genotype Call Methods (software) GenCall software(GenomeStudio)
Filtering Methods sample call rate < 0.99, SNP call rate < 0.99, HWE-P < 1x10^-7
Marker Number (after QC) 255,632 SNPs (on autosomal chromosomes、hg19)
NBDC Data Set ID

hum0114.v1.gwas.v1

(Click the Data Set ID to download the file)

Dictionary file

Total Data Volume 6 MB (txt.zip)
Comments (Policies) NBDC policy

*When the research results including the data which were downloaded from NHA/DRA, are published or presented somewhere, the data user must refer the papers which are related to the data, or include in the acknowledgment. Learn more

 

DATA PROVIDER

Principal Investigator: Yukinori Okada

Affiliation: Department of Statistical Genetics, Osaka University Graduate School of Medicine

Project / Group Name: -

Funds / Grants (Research Project Number):

NameTitleProject Number
-

 

PUBLICATIONS

TitleDOIData Set ID
1 Variants at HLA-A, HLA-C, and HLA-DQB1 confer risk of psoriasis vulgaris in Japanese doi: 10.1016/j.jid.2017.10.001 hum0114.v1.gwas.v1
2