NBDC Research ID: hum0031.v1
SUMMARY
Aims: Constructing database of magnetic resonance imaging of the brain and the ancillary clinical information for multisite collaboration studies
Methods: T1-weighted whole-brain structural images with clinical information of individuals with schizophrenia, mood disorders (unipolar and bipolar disorders) and healthy controls were acquired at three clinical sites in Japan. The data were anonymized and checked for quality.
Participants/Materials: 176 cases (normal control: 129; schizophrenia: 37; unipolar disorder: 8; biporlar disorder: 2)
| Dataset ID | Type of Data | Criteria | Release Date | |
|---|---|---|---|---|
|
1. |
Brain MRIs and clinical info of normal controls |
Controlled-access (Type I) |
2015/11/20 |
|
|
2. |
Brain MRIs and clinical info of patients with schizophrenia |
Controlled-access (Type I) |
2015/11/20 |
|
|
3. |
Brain MRIs and clinical info of patients with depression |
Controlled-access (Type I) |
2015/11/20 |
|
|
4. |
Brain MRIs and clinical info of patients with bipolar disorder |
Controlled-access (Type I) |
2015/11/20 |
|
|
5. |
Information on MRI equipments |
Unrestricted-access |
2015/11/20 |
*Restrictions on data use: NBDC policy & Company User Limit
*Data users need to apply an application for Using NBDC Human Data to reach the Controlled-access Data. Learn more
*When the research results including the data which were downloaded from NHA/DRA, are published or presented somewhere, the data user must refer the papers which are related to the data, or include in the acknowledgment. Learn more
Data Summary
● Datasets (JGAD000042)
| Item | File for Download | # of Cases | File Name Example | File Format (Extension) |
|---|---|---|---|---|
| Brain MRI | mriimg_normal.zip | 129 cases | CBSN0001 |
NIfTI (.nii) |
| Phantom MRI | mriimg_normal.zip | 64 cases | CBSNP0001 | NIfTI (.nii) |
| Subject's ID-Phantom ID-Equipment ID Mapping Table | mriqc_normal.tsv | 64 cases | - | Tab Separated Variables (.tsv) |
| Clinical Infomation | crf_normal.tsv | 129 cases | - | Tab Separated Variables (.tsv) |
● Clinical Infomation (crf_normal.tsv)
| Item Name | Description | Unit | Comment |
|---|---|---|---|
| ID | Subject's ID | - | - |
| AGE | Age at the time of imaging |
years old | - |
| GENDER | Gender | - | 1=male, 2=female |
| HEIGHT | Height | cm | - |
| WEIGHT | Weight | kg | - |
| PERIOD_OF_EDUCATION | Period of education | years | - |
| HANDEDNESS | Handedness | - | R=right hand, L=left hand |
| SES | Socioeconomic status | - | Hollingshead,A.B. (1957)※1 |
※1: Hollingshead, A.B. (1957). Two Factor Index of Social Position. Mimeo. New Haven, Connecticut: Yale University.
Click here to download the dictionary file of clinical infomation for normal controls.
● Datasets (JGAD000043)
| Item | File for Download | # of Cases | File Name Example | File Format (Extension) |
|---|---|---|---|---|
| Brain MRI | mriimg_sz.zip | 37 cases | CBSN0001 |
NIfTI (.nii) |
| Phantom MRI | mriimg_sz.zip | 12 cases | CBSNP0001 | NIfTI (.nii) |
| Subject's ID-Phantom ID-Equipment ID Mapping Table | mriqc_sz.tsv | 12 cases | - | Tab Separated Variables (.tsv) |
| Clinical Information | crf_sz.tsv | 37 cases | - | Tab Separated Variables (.tsv) |
● Clinical Information (crf_sz.tsv)
| Item Name | Description | Unit | Comment |
|---|---|---|---|
| ID | Subject's ID | - | - |
|
AGE |
Age at the time of imaging |
years old | - |
| GENDER | Gender | - | １=male, ２=female |
| HEIGHT | Height | cm | - |
| WEIGHT | Weight | kg | - |
| PERIOD_OF_EDUCATION | Period of education | years | - |
| HANDEDNESS | Handedness | - | Ｒ＝right hand, Ｌ＝left hand |
| SES | Socioeconomic status | - | Hollingshead,A.B. (1957)※1 |
| PANSS_POSITIVE | The Positive and Negative Syndrome Scale | - | Kay, S., et al. (1987)※2 |
| PANSS_NEGATIVE | The Positive and Negative Syndrome Scale | - | Kay, S., et al. (1987)※2 |
| PANSS_GENERAL_PSYCHOPATHOLOGY | The Positive and Negative Syndrome Scale | - | Kay, S., et al. (1987)※2 |
| DURATION_OF_ILLNESS | Duration of illness | years | - |
| CHLORPROMAZINE_EQUIVALENT_DOSE | Chlorpromazine equivalent dose | mg | - |
※1: Hollingshead, A.B. (1957). Two Factor Index of Social Position. Mimeo. New Haven, Connecticut: Yale University.
※2: Kay, S., Fiszbein, A., & Opler, L. (1987) The Positive and Negative Syndrome Scale (PANSS) for schizophrenia., Schizophrenia Bulletin, 13: 262 -276.
Click here to download the dictionary file of clinical information for schizophrenia patinents.
● Datasets (JGAD000044)
| Item | File for Download | # of Cases | File Name Example | File Format (Extension) |
|---|---|---|---|---|
| Brain MRI | mriimg_dep.zip | 8 cases | CBSN0001 |
NIfTI (.nii) |
| Phantom MRI | mriimg_dep.zip | 2 cases | CBSNP0001 | NIfTI (.nii) |
| Subject ID-Phantom ID-Equipment ID Mapping Table | mriqc_dep.tsv | 2 cases | - | Tab Separated Variables (.tsv) |
| Clinical Information | crf_dep.tsv | 8 cases | - | Tab Separated Variables (.tsv) |
● Clinical Information (crf_dep.tsv)
| Item Name | Description | Unit | Comment |
|---|---|---|---|
| ID | Subject's ID | - | - |
| AGE | Age at the time of imaging |
years old | - |
| GENDER | Gender | - | 1=male, 2=female |
| HEIGHT | Height | cm | - |
| WEIGHT | Weight | kg | - |
| PERIOD_OF_EDUCATION | Period of education | years | - |
| HANDEDNESS | handedness | - | R=right hand, L=left hand |
| SES | Socioeconomic status | - | Hollingshead,A.B. (1957)※1 |
| HAMD | Hamilton Depression Rating Scale | - | Hamilton, M. (1960)※3 |
※1: Hollingshead, A.B. (1957) Two Factor Index of Social Position. Mimeo. New Haven, Connecticut: Yale University.
※3: Hamilton M. (1960) A rating scale for depression. J Neurol Neurosurg Psychiatry, 23: 56–62.
Click here to download the dictionary file of clinical information for unipolar depression patinents.
● Datasets (JGAD000045)
| Item | File for Download | # of Cases | File Name Example | File Format（Extension） |
|---|---|---|---|---|
| Brain MRI | mriimg_bp.zip | 2 cases | CBSN0001 |
NIfTI (.nii) |
| Phantom MRI | mriimg_bp.zip | 0 cases | CBSNP0001 | NIfTI (.nii) |
| Subject ID-Phantom ID-Equipment ID Mapping Table | mriqc_bp.tsv | 0 cases | - | Tab Separated Variables (.tsv) |
| Clinical Information | crf_bp.tsv | 2 cases | - | Tab Separated Variables (.tsv) |
● Clinical Information (crf_bp.tsv)
| Item Name | Description | Unit | Comment |
|---|---|---|---|
| ID | Subject's ID | - | - |
| AGE | Age at the time of Imaging | years old | - |
| GENDER | Gender | - | 1=male, 2=female |
| HEIGHT | Height | cm | - |
| WEIGHT | Weight | kg | - |
| PERIOD_OF_EDUCATION | Period of education | years | - |
| HANDEDNESS | Handedness | - | R=right hand, L=left hand |
| SES | Socioeconomic status | - | Hollingshead,A.B. (1957)※1 |
| HAMD | Hamilton Depression Rating Scale | - | Hamilton, M. (1960)※3 |
※1: Hollingshead, A.B. (1957) Two Factor Index of Social Position. Mimeo. New Haven, Connecticut: Yale University.
※3: Hamilton M. (1960) A rating scale for depression. J Neurol Neurosurg Psychiatry, 23: 56–62.
Click here to download the dictionary file of clinical information for bipolar disorder patinents.
MRI Equipment
hum0031.v1.mri-equip.v1
| Equipment ID | ID of MRI Scanner |
| Vendor | Philips |
| Model | Achieva |
| Strength of Magnetic Field | 3T |
| Modality | 3D-T1 |
| B1 Correction | Performed |
| Sensitivity Correction | Performed |
| Head Coil | SENSE-Head-8 |
Click here to download the MRI equipment information and here for the dictionary file.
DATA PROVIDER
Principal Investigator: Kiyoto Kasai
Affiliation: Department of Neuropsychiatry, Graduate School of Medicine, the University of Tokyo
Project / Group Name: Comprehensive Brain Science Network (CBSN)
URL: http://npsy.umin.jp/, http://cbsn-mri.umin.jp/
Funds/Grants (Research Project Number): -
| Name | Title | Project Number |
|---|---|---|
| KAKENHI Grant-in-Aid for Scientific Research on Innovative Areas | Comprehensive Brain Science Network | 221S0003 |
| Life Science Database Integration Project (Database Integration Coordination Program) of Japan Science and Technology Agency | Study on integration of the human brain related diseases imaging data | - |
PUBLICATIONS
| Title | DOI | Dataset ID | |
|---|---|---|---|
| 1 |
|
USERS (Controlled-access Data)
| Principal Investigator | Affiliation | Country/Region | Research Title | Data in Use (Dataset ID) | Period of Data Use |
|---|---|---|---|---|---|
| Mikihiro Yasuda | Kwansei Gakuin University | Japan | Construction of a method for analyzing brain networks based on fMRI data | JGAD000042, JGAD000043, JGAD000044, JGAD000045 |
2023/08/25-2025/03/31 |
