NBDC Research ID: hum0023.v1

 

SUMMARY

Aims: Identify susceptible genes in hypertension

Methods: Whole Exome sequencing by using of Illumina HiSeq 2000

Participants/Materials: Patients with severe hypertension

 

Data Set IDType of DataCriteriaRelease Date
JGAS00000000016 NGS (Exome) Controlled Access (Type I) 2015/01/28

*Release Note 

* Data users need to apply the Form 2 (Application Form for Using NBDC Human Data) to reach the Controlled Access Data. Learn more

 

MOLECULAR DATA

JGAS00000000016

Participants/Materials Thirty patients with severe hypertension.
Targets Exome
Target Loci for Capture Methods -
Platform Illumina [HiSeq 2000]
Library Source gDNA extracted from peripheral blood cells
Cell Lines -
Library Construction (kit name)

SureSelect Human All Exon 50 Mb Kit (Agilent)

Fragmentation Methods Covaris (S220)
Spot Type Paired-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers) 100 bp
Japanese Genotype-phenotype Archive Data set ID JGAD00000000016
Total Data Volume 405 GB (634 files)
Comments (Policies)

NBDC policy

This study was supported by “Genome Science”. “Genome Science” is a part of the “Support Programs for Three Fields in Life Sciences (cancer, genome and brain sciences)” established by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) under the Grant-in-Aid for Scientific Research on Innovative Areas.

 

DATA PROVIDER

Principal Investigator: Tetsurou Miki

Affiliation: Department of Geriatric Medicine and Neurology, Ehime University, Graduate School of Medicine

Project / Group Name: Millennium Genome Project

Funds / Grants (Research Project Number):

NameTitleProject Number

KAKENHI Grant-in-Aid for Scientific Research (B)

Identification of genetic predisposition to non-communicable diseases by a large-scale longitudinal genetic epidemiological study.

21390099

 

PUBLICATIONS

TitleDOIData Set ID
1
2

 

USERS (Controlled-Access Data)

Principal Investigator: Affiliation: Data in Use (Data Set ID)Period of Data Use