NBDC Research ID: hum0018.v1

 

SUMMARY

Aims: Identify causative genes or susceptible genes in neurodegenerative diseases

Methods: Exome sequence analysis using Illumina HiSeq 2000

Participants/Materials: 14 patients with multiple system atrophy and 7 healthy control subjects

 

Data Set IDType of DataCriteriaRelease Date
JGAS00000000009 NGS (Exome) Controlled Access (Type I) 2015/02/03

*Release Note 

* Data users need to apply the Form 2 (Application Form for Using NBDC Human Data) to reach the Controlled Access Data. Learn more

 

MOLECULAR DATA

JGAS00000000009

Participants/Materials Fourteen patients with multiple system atrophy and 7 healthy control subjects
Targets Exome
Target Loci for Capture Methods

-

Platform Illumina [HiSeq 2000]
Library Source gDNA extracted from peripheral blood cells
Cell Lines -
Library Construction (kit name)

SureSelect Human All Exon 50 Mb Kit (Agilent)

Fragmentation Methods Covaris (S220)
Spot Type Paired-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers) 100 bp
Japanese Genotype-phenotype Archive Data set ID JGAD00000000009
Total Data Volume 260 GB
Comments (Policies)

NBDC policy

 

DATA PROVIDER

Principal Investigator: Shoji Tsuji

Affiliation: Department of Neurology, Graduate School of Medicine, The University of Tokyo

Project / Group Name:

Funds / Grants (Research Project Number):

NameTitleProject Number
Ministry of Education, Culture, Sports, Science and Technology Japan (MEXT) KAKENHI Genome Science 211S0002

 

PUBLICATIONS

TitleDOIData Set ID
1 Multiple-System Atrophy Research Collaboration. Mutations in COQ2 in familial and sporadic multiple-system atrophy. doi:10.1056/NEJMoa1212115 JGAD00000000009
2

 

USERS (Controlled-Access Data)

Principal Investigator: Affiliation: Data in Use (Data Set ID)Period of Data Use